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ICIDM-KNOWLEDGE-GAIN-PILOT-v0.1.csv

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id,year,title,pathogen,technology,new_relationships_in_sample,new_finding_candidate,validation_candidate,boundary_expansion_candidate,conflict_resolution_candidate,relationship_creation_candidate,capability_creation_candidate,status
CPD-0017,1995,Cryptococcal disease of the CNS in immunocompetent hosts: influence of cryptococcal variety on clinical manifestations and outcome.,Cryptococcus,Serology / immunology,1,0,0,0,0,1,0,AI_PREREVIEWED / NOT IMPACT SCORE / HI_REVIEW_REQUIRED
CPD-0027,1996,Identification by random amplification of polymorphic DNA of a common molecular type of Cryptococcus neoformans var. neoformans in patients with AIDS or other immunosuppressive conditions.,Cryptococcus,PCR / molecular diagnostics; Serology / immunology,1,1,0,0,0,1,1,AI_PREREVIEWED / NOT IMPACT SCORE / HI_REVIEW_REQUIRED
CPD-0042,1996,Differing antibody responses to Haemophilus influenzae type b after meningitis or epiglottitis.,Influenza / respiratory viruses,Serology / immunology,1,0,0,0,0,1,0,AI_PREREVIEWED / NOT IMPACT SCORE / HI_REVIEW_REQUIRED
CPD-0043,1996,Sporadic invasion of cultured epithelial cells by Haemophilus influenzae type b.,Influenza / respiratory viruses,Culture / phenotypic methods; Serology / immunology,1,0,0,0,0,1,0,AI_PREREVIEWED / NOT IMPACT SCORE / HI_REVIEW_REQUIRED
CPD-0071,1997,Comparison of use of phenotypic and genotypic characteristics for identification of species of the anamorph genus Candida and related teleomorph yeast species.,Candida / Candidozyma,Culture / phenotypic methods,1,1,1,0,1,1,0,AI_PREREVIEWED / NOT IMPACT SCORE / HI_REVIEW_REQUIRED
CPD-0082,1997,Cloning and characterisation of the aroA and aroD genes of Shigella dysenteriae type 1.,Shigella,Culture / phenotypic methods; Serology / immunology,2,0,0,0,0,1,0,AI_PREREVIEWED / NOT IMPACT SCORE / HI_REVIEW_REQUIRED
CPD-0092,1998,Clinical evaluation of the Mycobacteria Growth Indicator Tube (MGIT) compared with radiometric (Bactec) and solid media for isolation of Mycobacterium species.,Nontuberculous mycobacteria,Culture / phenotypic methods,1,0,1,0,1,1,0,AI_PREREVIEWED / NOT IMPACT SCORE / HI_REVIEW_REQUIRED
CPD-0100,1998,Evaluation of four methods for rapid identification of Staphylococcus aureus from blood cultures.,Staphylococcus aureus / MRSA,Culture / phenotypic methods,1,1,1,0,0,1,0,AI_PREREVIEWED / NOT IMPACT SCORE / HI_REVIEW_REQUIRED
CPD-0303,2005,Diagnosis of cerebral cryptococcoma using a computerized analysis of 1H NMR spectra in an animal model.,Cryptococcus,Culture / phenotypic methods; Bioinformatics / modelling,2,0,0,0,0,1,1,AI_PREREVIEWED / NOT IMPACT SCORE / HI_REVIEW_REQUIRED
CPD-0361,2006,Genotyping of Mycobacterium tuberculosis in New South Wales: results from 18 months of a statewide trial.,Mycobacterium tuberculosis complex; Nontuberculous mycobacteria,Clinical trial / therapy,2,1,0,0,0,1,0,AI_PREREVIEWED / NOT IMPACT SCORE / HI_REVIEW_REQUIRED
CPD-0375,2006,"Simultaneous detection and identification of Candida, Aspergillus, and Cryptococcus species by reverse line blot hybridization.",Candida / Candidozyma; Aspergillus; Cryptococcus,Culture / phenotypic methods,1,1,0,0,0,1,0,AI_PREREVIEWED / NOT IMPACT SCORE / HI_REVIEW_REQUIRED
CPD-0399,2006,Use of PCR and reverse line blot hybridization macroarray based on 16S-23S rRNA gene internal transcribed spacer sequences for rapid identification of 34 mycobacterium species.,Nontuberculous mycobacteria,Whole-genome sequencing; PCR / molecular diagnostics; Culture / phenotypic methods,2,1,0,0,0,1,1,AI_PREREVIEWED / NOT IMPACT SCORE / HI_REVIEW_REQUIRED
CPD-0407,2007,Comparison of single- and multilocus sequence typing and toxin gene profiling for characterization of methicillin-resistant Staphylococcus aureus.,Staphylococcus aureus / MRSA,Whole-genome sequencing; Culture / phenotypic methods,1,0,1,0,1,1,1,AI_PREREVIEWED / NOT IMPACT SCORE / HI_REVIEW_REQUIRED
CPD-0443,2007,Is Bordetella pertussis susceptibility to erythromycin changing? MIC trends among Australian isolates 1971-2006.,Bordetella pertussis,Culture / phenotypic methods,1,0,0,0,0,1,0,AI_PREREVIEWED / NOT IMPACT SCORE / HI_REVIEW_REQUIRED
CPD-0472,2008,Barmah Forest virus serology; implications for diagnosis and public health action.,Arboviruses,Serology / immunology,1,0,0,0,0,1,1,AI_PREREVIEWED / NOT IMPACT SCORE / HI_REVIEW_REQUIRED
CPD-0568,2009,First report of putative Streptococcus pneumoniae serotype 6D among nasopharyngeal isolates from Fijian children.,Streptococcus pneumoniae,Clinical trial / therapy,1,1,0,0,0,1,0,AI_PREREVIEWED / NOT IMPACT SCORE / HI_REVIEW_REQUIRED
CPD-1032,2015,Converting Mosquito Surveillance to Arbovirus Surveillance with Honey-Baited Nucleic Acid Preservation Cards.,Arboviruses,PCR / molecular diagnostics,1,0,0,1,0,1,0,AI_PREREVIEWED / NOT IMPACT SCORE / HI_REVIEW_REQUIRED
CPD-1088,2015,Pertactin negative Bordetella pertussis demonstrates higher fitness under vaccine selection pressure in a mixed infection model.,Bordetella pertussis,Bioinformatics / modelling,1,0,0,0,0,1,0,AI_PREREVIEWED / NOT IMPACT SCORE / HI_REVIEW_REQUIRED
CPD-1145,2016,Combination of Vancomycin and β-Lactam Therapy for Methicillin-Resistant Staphylococcus aureus Bacteremia: A Pilot Multicenter Randomized Controlled Trial.,Staphylococcus aureus / MRSA,Clinical trial / therapy,1,0,0,1,0,1,0,AI_PREREVIEWED / NOT IMPACT SCORE / HI_REVIEW_REQUIRED
CPD-1146,2016,"Stimulation with lysates of Aspergillus terreus, Candida krusei and Rhizopus oryzae maximizes cross-reactivity of anti-fungal T cells.",Candida / Candidozyma; Aspergillus,Serology / immunology; Clinical trial / therapy,4,0,0,0,0,1,0,AI_PREREVIEWED / NOT IMPACT SCORE / HI_REVIEW_REQUIRED
CPD-1172,2016,Whole-genome sequencing of Mycobacterium tuberculosis for rapid diagnostics: feasibility of a decentralised model.,Mycobacterium tuberculosis complex; Nontuberculous mycobacteria,Whole-genome sequencing; Bioinformatics / modelling,3,0,0,0,0,1,1,AI_PREREVIEWED / NOT IMPACT SCORE / HI_REVIEW_REQUIRED
CPD-1217,2017,"Shigella species epidemiology and antimicrobial susceptibility: the implications of emerging azithromycin resistance for guiding treatment, guidelines and breakpoints.",Shigella,Culture / phenotypic methods; Clinical trial / therapy,1,1,0,1,0,1,0,AI_PREREVIEWED / NOT IMPACT SCORE / HI_REVIEW_REQUIRED
CPD-1359,2018,First documented gymnasium cluster of COVID-19 with whole genome sequencing in Australia.,SARS-CoV-2,Whole-genome sequencing,1,1,0,0,0,1,1,AI_PREREVIEWED / NOT IMPACT SCORE / HI_REVIEW_REQUIRED
CPD-1631,2021,Association between convalescent plasma treatment and mortality in COVID-19: a collaborative systematic review and meta-analysis of randomized clinical trials.,SARS-CoV-2,MALDI-TOF MS; Clinical trial / therapy,2,0,0,0,0,1,0,AI_PREREVIEWED / NOT IMPACT SCORE / HI_REVIEW_REQUIRED